Howdy.
First thing to know when talking Yamaha WR250F versus WR250R:
The bikes are not the same machines, not engines or frames or suspension or even the front brake or clutch levers.
In fact, not even close, and it's only the way they both look like blue dirt bikes built by the Yamaha factory that has people wondering about any similarities.
So, it's imperative you remember to use and look for the letter on the end, be it F or R.
This tells the story.
For some reason (maybe to fool you), the Yamaha marketing men gave them similar designations, but, they are as different as can be.
Remember that.
The two models that are nearly identical are the WR250R and WR250X, with the differences being what makes one a dual-purpose bike and the other a motard, along with cosmetic differences (like frame and swingarm paint and fork tube anodizing).
I've owned a few of these bikes:
2008 WR250R
2008 WR250X
2009 WR250F
2002 WR250F (which I still have to this day).
Which one do you want?
The way I see it, if you want a dirt bike first and foremost, then a registered WR250F makes sense because I've had two of them, myself, and they are excellent dirt bikes.
They come with transmission and final drive ratios for off-road usage, so they are not a good choice for lots of street riding.
That means, unless you want to gear it up considerably (and hurt off-road performance), cruising speed is around 40 mph.
They are lighter and come with a better-performing suspension, and, are literally the off-road version of the YZ250F motocross bike.
If you were to ride the bike like I ride a dual-purpose bike (off-road after work or on Sunday, with road riding all week long), then the WR250R is the better choice, mainly because it has an extra transmission gear (6-speeds) and has the gearing to cruise at road speeds other vehicles cruise at these days.
The engine is also a bit smoother with noticeably less vibration.
This, along with the taller gearing for the street, makes the bike feel much better suited to road riding.
This is a big deal when you actually use the bike a lot on the street.
This bike is not the off-road version of the YZ250F motocross bike, but is made to look like one, especially at a distance or to the untrained eye.
That's the marketing at work.
Some of my other thoughts about WR250F vs. WR250R:
No matter which one you ride off-road, BOTH will require the same maintenance.
That is, both air filters will get dirty, even after one dusty ride off-road.
Both require engine oil changes on a regular basis, and the 3,000 mile interval shown in the WR250R Owner's Manual is for street riding.
Same goes for the 26,000 mile valve clearance check interval - if using the WR250R as a dirt bike, I'd check it at least once a year.
Heck, I'd check it once a year, regardless.
Both require periodic chassis bearing lube, lest they get rusty and squeaky.
WR250Rs are the same machine from day No. 1, so 2008 to 2015 model years are the same, save for cosmetics.
2005 and 2006 WR250Fs are practically the same, with the main difference being the 2005 model using the traditional mechanical trip meter and the 2006 model having the digital LCD speedometer/trip meter/computer.
2007 - 2013 WR250Fs are the same machine and mainly differ from the 2005 - 2006 models by using the aluminum frame based on the 2006 YZ250F.
By the way, I never felt any significant seat height difference between the WR250F and WR250R.