I have the fmf programmer, q4 pipe with stock header, ais delete and a very open air box, I did the ulitame air box mod plus cut a 2 1/2 by 2 1/2 hole above the filter.
I run 3-2-.5-8-6-4.
Heres a few tips on setting it up...
9/10 people run the first setting on 3, the 3rd on .5, the 4th on 8, the 5th on 6 and the 6th on 4 on a piped stock internal motor, you can set these and forget em IMO, big bores have totally different settings.
Putting the 5th setting below 6 causes cut outs so leave it on 6.
Setting the 2nd setting too high causes hicups, my bike has a tiny bit more power with it on 3 or 4 but I get a slight hicup at times, this is the only setting I'd mess with, try it between 2 and 4 to see what you like best.