Welcome to the forum Takis!
I'm responding to you because my WR "R" used to be an X before she left the dealers gate early 2011. If you have somebody around who can build wheels it is an easy job.
Re-use the hubs and break systems entirely, put on new rims of the correct size. The correct spoke kits can be purchased from places who sell OEM Yamaha parts. Once you are at it, you may want to replace the wheel bearings too. - Done.
Mine is on DID Dirt Star rims, but sure there are a few more options on the market.
Regarding valve clearance check - yes that is due at 40-42k km. The 2008 Manual, that can be found on the web (just google it) says 26600 mls or 42000 km. However, as far as I've read on the forum that manual is not the latest update. I had mine checked at 20k km, just since the shop was at it anyways for the 20 k km inspection. They gave me an update maintenance schedule print-out from their Yamaha Germany database. There, all these odd mileage numbers are changed to 10K multiples, hence valve clearance every 40000 km.
Regarding spare parts: yes the bike is extremely rare here in Europe - and no, I had no issues getting some parts. Additionally a lot of aftermarket stuff is available from the States, you just need to figure out how to ship it halfway cost effective. I have had the occasion that due to USD-EUR FX rate, parts available here in Europe, such as my Safari tank, came cheaper from the States, including shipping and customs. Not by much, but still. Though, this has changed a lot with Covid recently.
How is offroad in Greece? Lot's of bans as in entire Western Europe now? Or still some (legal) freedom left?
Cheers