From what little I've read on subjects like this....you're phucked.
You need to find a direct replacement.
You can use a trail tech in conjunction with Yamaha unit, but not as a direct replacement.
At least that's what I've read from a few different sources. I'd be happy if I was wrong.
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2008 WR250X
Gearing: 13t - 48t
Power Commander 5 / PC-V
Airbox Door Removed - Flapper glued - AIS removed
FmF Q4
Bridgestone Battlax BT-003rs